Insertion junction: CLIP2.067499_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.067499
Chromosome:chromosome 12
Location:5588949
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g531100 PBA2 20S proteasome beta subunit A2; (1 of 2) K02738 - 20S proteasome subunit beta 1 (PSMB6) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCACTACCGGTACTGAAGACGCGGATGCCTCATCAAGATGCATGGCGGCT
Internal bar code:CTGATACTAAGTGGTTAAATTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1303
LEAP-Seq percent confirming:27.5
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:29
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:GTCAGTGGTGTCTGCGTGTA
Suggested primer 2:CTGCTGACACATTGTTGGCC