Insertion junction: CLIP2.067532_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.067532
Chromosome:chromosome 11
Location:1108149
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467674 (1 of 781) IPR000104 - Antifreeze protein, type I 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCCCGCGTGCCTGCTGTCAAATCTGTATGGTGCCCCCTCCCCATCAAAA
Internal bar code:GAAGGGATGTGCCAGCGTTTCT

Confirmation - LEAP-Seq

LEAP-Seq distance:807
LEAP-Seq percent confirming:17.7778
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:37
LEAP-Seq n unique pos:45

Suggested primers for confirmation by PCR

Suggested primer 1:TACCAGTATGCCCAGGAGCT
Suggested primer 2:CAGACAGAGGAGGTGGAGGA