Insertion junction: CLIP2.067533_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.067533
Chromosome:chromosome 12
Location:484039
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g494500 LF2,CDKI1 Cyclin dependent kinase; (1 of 1) PTHR24056//PTHR24056:SF171 - CELL DIVISION PROTEIN KINASE // CYCLIN-DEPENDENT KINASE 20 3'UTR
Cre12.g801345 (1 of 1) IPR002200 - Elicitin 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGCGGACAGCTAGTCCGGCCAAGACTTGACTGGCACAGCGGCATCTTGG
Internal bar code:ATACGCACTAGCGGATCTAGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1601
LEAP-Seq percent confirming:72.7273
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:TTGACCGCAGACGTCATCAA
Suggested primer 2:CACAAGTCTCCACCCCTGAC