Insertion junction: CLIP2.067636_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.067636
Chromosome:chromosome 12
Location:8916198
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g545800 ROC55,ROC11 Rhythm Of Chloroplast 55; (1 of 24) IPR006553 - Leucine-rich repeat, cysteine-containing subtype 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTAGCGGCGACTGTCTTGGCGAGTTGCGATGGGGGATTAGTGTGTCTCA
Internal bar code:ATGCATGATAAGATGGTGAAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:4938
LEAP-Seq percent confirming:96.6667
LEAP-Seq n confirming:87
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:90

Suggested primers for confirmation by PCR

Suggested primer 1:GGACTGTCTGCTTGAGCTGT
Suggested primer 2:CTGCGGTGTGAAAGTGTGTG