Insertion junction: CLIP2.067691_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.067691
Chromosome:chromosome 6
Location:6771990
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g295950 (1 of 781) IPR000104 - Antifreeze protein, type I 3'UTR
Cre06.g800726 (1 of 80) IPR003882 - Pistil-specific extensin-like protein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTTAGGGCAGCATTAGTAATGCGCCAACCGCATGCGCGGCTATGAAGTG
Internal bar code:GTCATTCGTGCCATCCAGAACG

Confirmation - LEAP-Seq

LEAP-Seq distance:1091
LEAP-Seq percent confirming:86.6667
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:GACGGATGAGCACCTCTACG
Suggested primer 2:CGTTTTTGCTTGACTCGGCA