Insertion junction: CLIP2.067789_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.067789
Chromosome:chromosome 4
Location:3329748
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g227251 (1 of 1) IPR006626//IPR008752//IPR011050//IPR029018 - Parallel beta-helix repeat // Peptidase M11, gametolysin // Pectin lyase fold/virulence factor // Chitobiase/beta-hexosaminidase domain 2-like 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTCATGCCGGTGTGAATGCTCCTCATCAGACTATTGGTGATTAGACGGA
Internal bar code:TACCTAGTGAAGAGGTGAAAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:3176
LEAP-Seq percent confirming:98.1818
LEAP-Seq n confirming:54
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:55

Suggested primers for confirmation by PCR

Suggested primer 1:CAGAAGCAGTGCCCACAGTA
Suggested primer 2:AGCATCGTACGCGCTAATGA