Insertion junction: CLIP2.067795_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.067795
Chromosome:chromosome 2
Location:4036934
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g103000 FKM3 DNA methylase in the FkbM family; (1 of 13) PF05050 - Methyltransferase FkbM domain (Methyltransf_21) outside_mRNA
Cre02.g103050 (1 of 26) IPR013026//IPR019734 - Tetratricopeptide repeat-containing domain // Tetratricopeptide repeat 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTCCACCTTAATATTATCCGAGAGCACGCTGTGCACATGTATAGGCCAT
Internal bar code:ATAGATCATGGGTCCGCCTTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:2162
LEAP-Seq percent confirming:92.8571
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:ACAGACGCCTATTTCGCACA
Suggested primer 2:CCTTGCCGTCTAGCTTGACA