Insertion junction: CLIP2.067840_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.067840
Chromosome:plastome
Location:58553
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802286 ycf12 proposed transmembrane component of photosystem II; (1 of 1) PF05969 - Photosystem II complex subunit Ycf12 (PSII_Ycf12) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACATACTTCTTAATAACAAAGAAAAATTTTGTTCACAAACACACATTAA
Internal bar code:GCCCGAAGTGGGGTAATTCAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:184
LEAP-Seq percent confirming:13.1148
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:53
LEAP-Seq n unique pos:61

Suggested primers for confirmation by PCR

Suggested primer 1:GTTCGTAGCCAGACCACACA
Suggested primer 2:ACACCAGAGCGTCCTTTCTG