Insertion junction: CLIP2.067857_4

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.067857
Chromosome:chromosome 3
Location:4181810
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g173300 (1 of 6) IPR007577//IPR029044 - Glycosyltransferase, DXD sugar-binding motif // Nucleotide-diphospho-sugar transferases 5'UTR
Cre03.g173350 ANK22b,ANK22 (1 of 1) PTHR24193//PTHR24193:SF88 - ANKYRIN REPEAT PROTEIN // SUBFAMILY NOT NAMED; Predicted protein with ankyrin repeats 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTATGTACTGTAAGGTTTAAATTGACTCGGTCTCGGCACGCAAGCGTCTG
Internal bar code:TTCCCTCGTATATATTAGTCCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1884
LEAP-Seq percent confirming:95.3125
LEAP-Seq n confirming:61
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:64

Suggested primers for confirmation by PCR

Suggested primer 1:CATCTGCTTCGCGATCTCCT
Suggested primer 2:TGATACATGCACACGCCTGT