Insertion junction: CLIP2.067859_4

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.067859
Chromosome:chromosome 7
Location:1045409
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g319750 HEL35 (1 of 1) K14807 - ATP-dependent RNA helicase DDX51/DBP6 [EC:3.6.4.13] (DDX51, DBP6); DEAD box ATP-dependent RNA helicase 3'UTR
Cre07.g319800 (1 of 1) IPR000104//IPR009148 - Antifreeze protein, type I // Streptococcal non-M secreted SibA outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTGCAATCCGCACACATTGATTGAGTTCTGTACTTTGAGCGGCTTGCCG
Internal bar code:TGATTGTGTTATTGTGTAACAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1194
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:GAGCAGGAGACTCAACACCC
Suggested primer 2:GGGTGATAGTTGGTTGGCGA