Insertion junction: CLIP2.067905_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.067905
Chromosome:plastome
Location:143034
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802321 psbA,2716987,ChreCp057 (1 of 2) K02703 - photosystem II P680 reaction center D1 protein (psbA); photosystem II protein D1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTTATGCTAATATAGCTCAGGTTCGTAATCACGAACTAATTTCTCTTA
Internal bar code:GACGCGCGAGGGTAGTAATTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:100
LEAP-Seq percent confirming:5.26316
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:36
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:TTATGTGGACCACCGGTGTG
Suggested primer 2:TGCTGGTGTATTCGGTGGTT