Insertion junction: CLIP2.067908_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.067908
Chromosome:plastome
Location:199927
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802335 rpoC1,ChreCp069,2717049 (1 of 2) K03046 - DNA-directed RNA polymerase subunit beta' (rpoC); RNA polymerase beta' chain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCATGTTTGGTTTGTAAAAGGTATACCAAGTTATATCTCGATACTATTA
Internal bar code:CAGTGAGGCAAAGGGGAGTTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:179
LEAP-Seq percent confirming:10.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:TCCTGCAGGCCATCCATTTT
Suggested primer 2:CAAGCACAGCTCGCTCTTTC