Insertion junction: CLIP2.067954_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.067954
Chromosome:chromosome 13
Location:622219
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g565750 EFG4 (1 of 1) K14416 - elongation factor 1 alpha-like protein (HBS1); Translation elongation factor Tu family protein 5'UTR
Cre13.g565800 UPTG1,UPT1,RGP1,UTPG1,EZY11 UDP-Arabinosyl mutase. .; (1 of 1) 5.4.99.30 - UDP-arabinopyranose mutase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGCAAGTGGCTGACAGGCTGGTGGCGTGCACTTTGGCACAATCCAGCAC
Internal bar code:ATCTAGTGGGTTAGAGCTCCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:4918
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:58
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:58

Suggested primers for confirmation by PCR

Suggested primer 1:CCTTCTTAGGAGCTGGAGCG
Suggested primer 2:GGAGGAGTGCTACATCGAGC