Insertion junction: CLIP2.067964_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.067964
Chromosome:plastome
Location:62338
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802290 ChreCp026,2716975,psbM photosystem II protein M; (1 of 1) K02714 - photosystem II PsbM protein (psbM) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATTTATATTAGGACGCCAGTGGCAGTGGTACCGCCACTGCCTATTTTAA
Internal bar code:TACTACAGTTACTTCGCTAATG

Confirmation - LEAP-Seq

LEAP-Seq distance:382
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:TCGGAAGGAGAATGTTGCCC
Suggested primer 2:ATGTGATGCCTCGCCTATCG