Insertion junction: CLIP2.068038_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.068038
Chromosome:chromosome 10
Location:3805345
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g445650 SMC3 (1 of 1) K06669 - structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6) (SMC3, CSPG6); Structural Maintenance of Chromosomes protein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATGTGCTTAGACACTCAGATTGTCCCCTCTTATAACATCGCAATCTTAC
Internal bar code:TCACACCGTGGCGTACCGCATA

Confirmation - LEAP-Seq

LEAP-Seq distance:2115
LEAP-Seq percent confirming:85.2941
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:34

Suggested primers for confirmation by PCR

Suggested primer 1:GCCCAGAACTTCGTTCCTCA
Suggested primer 2:ATCGCATATGTTCGAGCCGT