Insertion junction: CLIP2.068038_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.068038
Chromosome:chromosome 10
Location:3805345
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g445650 SMC3 (1 of 1) K06669 - structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6) (SMC3, CSPG6); Structural Maintenance of Chromosomes protein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGAGAGACCATGGACTTCCACCGAAGCCCAACCCCGGTGTTGCTGCAAA
Internal bar code:AAAGCCAATCGGAAATGGGGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1773
LEAP-Seq percent confirming:93.9394
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:ATCGCATATGTTCGAGCCGT
Suggested primer 2:GCCCAGAACTTCGTTCCTCA