Insertion junction: CLIP2.068145_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.068145
Chromosome:chromosome 13
Location:2746752
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g582150 (1 of 58) PTHR12393//PTHR12393:SF6 - SPHINGOMYELIN PHOSPHODIESTERASE RELATED // SPHINGOMYELIN PHOSPHODIESTERASE 2 3'UTR
Cre13.g582201 (1 of 1) PTHR13622//PTHR13622:SF8 - THIAMIN PYROPHOSPHOKINASE // THIAMIN PYROPHOSPHOKINASE 1 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGAGAGATATGGTTTCTACTCTCTGACCGACCAAAGCAGTTCAGATTTGC
Internal bar code:TGATTCATTGCGATGTGGTAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1011
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:GTCACGGATACACGCATTGC
Suggested primer 2:GTGTTGGTGAGGCGTAGTGA