Insertion junction: CLIP2.068210_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.068210
Chromosome:chromosome 9
Location:5797185
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g411250 (1 of 60) IPR001611 - Leucine-rich repeat 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCCACAATCCCAAGCCAAGCAGGTTGACAGCGACCGCGTTACATCCGCA
Internal bar code:CGGTGGCAGTATGGACTCTTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:736
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:CCCAATCCCTTTCACCCTCC
Suggested primer 2:ATGTTTTGTCAGCGCGATCG