Insertion junction: CLIP2.068234_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.068234
Chromosome:chromosome 10
Location:5243882
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g456300 NAC2,MBD1 (1 of 1) IPR003107//IPR013026//IPR019734 - HAT (Half-A-TPR) repeat // Tetratricopeptide repeat-containing domain // Tetratricopeptide repeat; PsbD mRNA maturation factor Nac2 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCTGGCTAAAACTAGCACACCACACCAGCACCCGACGCCGCCGGCCCCC
Internal bar code:ATTACTGGGAAGTTTCGGTGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1473
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TCTCCATGCCTCCTCTCACA
Suggested primer 2:CCATCTCCTCACGCCCTTTT