Insertion junction: CLIP2.068279_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.068279
Chromosome:chromosome 11
Location:1894229
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467785 (1 of 3) PTHR10625:SF102 - HISTONE DEACETYLASE 10 5'UTR
Cre11.g467786 (1 of 1) 1.14.13.15 - Cholestanetriol 26-monooxygenase / Vitamin D(3) 25-hydroxylase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTGTTACATAGTCGTTTATGCAGTCAACGTCGGTGCGGCGAGCTGCCCT
Internal bar code:TTCTTAAGGGCGCTAGTGGAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:741
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:CGCTGCTCGCTATGGTTTTC
Suggested primer 2:ATCATCTGCTCCGCACTCAG