Insertion junction: CLIP2.068321_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.068321
Chromosome:chromosome 6
Location:2667045
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g270500 (1 of 1) PF00759//PF03067 - Glycosyl hydrolase family 9 (Glyco_hydro_9) // Chitin binding domain (Chitin_bind_3) intron
lncRNA_TCONS_00027203 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGCAGACGTGCAGCTTGCGGATGCAAAATATGCACGTACCAAAATAGTT
Internal bar code:GTGTAAAGTCGGAAACCTATAG

Confirmation - LEAP-Seq

LEAP-Seq distance:3001
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:38
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:ATAAAGCTAGGCCTCGACGC
Suggested primer 2:GTTGAAGCAGTCGTGGGAGA