Insertion junction: CLIP2.068354_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.068354
Chromosome:chromosome 3
Location:1553613
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g152150 (1 of 1) IPR007087//IPR013087//IPR015880 - Zinc finger, C2H2 // Zinc finger C2H2-type/integrase DNA-binding domain // Zinc finger, C2H2-like 5'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCAGTGCGAGCAGGCGCCCGCGAACACCGGCAACGGCCTGAGGCCTCGCC
Internal bar code:TTTCGTGACATGAGAAGAGTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2499
LEAP-Seq percent confirming:98.6111
LEAP-Seq n confirming:71
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:72

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCCACAAACTTTGCTGCC
Suggested primer 2:CTCAGACTCAGGGTGCTTGG