Insertion junction: CLIP2.068453_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.068453
Chromosome:chromosome 13
Location:2552384
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g580300 CGLD4,ABC3 Conserved in the Green Lineage and Diatoms; (1 of 1) PTHR12847//PTHR12847:SF6 - ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED // ABC TRANSPORTER I FAMILY MEMBER 19-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTCGGGTGACACGCTCGGCGCTCCCCGGTGCTCCAGATCACTCTGTACC
Internal bar code:ATGCTGGTTTGAAGTCTCCGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1298
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCACCCTCTTATCTCCCA
Suggested primer 2:GCAGCTTTGTCGTCGCTATG