Insertion junction: CLIP2.068466_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.068466
Chromosome:plastome
Location:91324
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802302 pafII,ycf4 photosystem I assembly factor II; (1 of 1) PF02392 - Ycf4 (Ycf4) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTTAAAGGAATTTCTCTTTTGCCTTTTAAGCGTAAATAGATAGTTCGTT
Internal bar code:AGGGTGCATTCGTAAATGTCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:114
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:CGTTCATTGCCGTCCTTTGG
Suggested primer 2:GCTTGTGCTGACATGCCATT