Insertion junction: CLIP2.068478_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.068478
Chromosome:chromosome 2
Location:1629696
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g085150 (1 of 19) PTHR31251:SF1 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTCATCATGTGGAACCACCCAGGCGCCGTGCGGTGTCCGCACGGCCAAG
Internal bar code:GTGGAAATGGAGTGATGGCGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:3504
LEAP-Seq percent confirming:87.4074
LEAP-Seq n confirming:118
LEAP-Seq n nonconfirming:17
LEAP-Seq n unique pos:135

Suggested primers for confirmation by PCR

Suggested primer 1:CTATCGGTGCAAGCTCGCTA
Suggested primer 2:TGTGTTACTAAACGCGGCCT