Insertion junction: CLIP2.068516_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.068516
Chromosome:chromosome 4
Location:4079498
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g233302 (1 of 2) PTHR23132//PTHR23132:SF9 - D-ALANINE--D-ALANINE LIGASE // SUBFAMILY NOT NAMED outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTAGAGTGCTGGGGCTGGGGCTGTGGTCCGTGGTGGTGGCAATGGCGGTT
Internal bar code:GGTTGTACTAGTTCGGGACCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1769
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:ATACTTGGGCGCCGTGATAG
Suggested primer 2:TATCCAACCCGCCTAGACCA