Insertion junction: CLIP2.068571_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.068571
Chromosome:chromosome 3
Location:671399
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g145747 SHK7,SHKH1 (1 of 1) 4.2.3.5 - Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyase; Chorismate synthase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGCGGCCCTCCGCTCGTGCGACTGGGCTGGAGGCGTGGGGGTTATCCT
Internal bar code:CTGATGTGATCACAACCTTCCT

Confirmation - LEAP-Seq

LEAP-Seq distance:954
LEAP-Seq percent confirming:73.3333
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTTTGTATGGAGCGGGGA
Suggested primer 2:GCACTAAATGGGGGTGAGCT