Insertion junction: CLIP2.068621_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.068621
Chromosome:plastome
Location:167103
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802324 tic214,orf1995,ycf1,2717035,ChreCp059 Forms with TIC20, TIC56 and TIC100 the 1-MD complex mediating chlorolast protein import CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGAAAATATAAAATAGGTAAAAACCGCACCAAATTCGGTATAATTTTTT
Internal bar code:TTAGGCTAGGGTGGTCTTGATT

Confirmation - LEAP-Seq

LEAP-Seq distance:157
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:CTCCCCTTCCCCTAACGAGA
Suggested primer 2:GTGTACCAAGGCCAGCCATA