Insertion junction: CLIP2.068803_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.068803
Chromosome:chromosome 3
Location:8234046
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g200050 CAL1 (1 of 2) PF13202//PF13833 - EF hand (EF-hand_5) // EF-hand domain pair (EF-hand_8); Calpain family cysteine protease intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATTCTGCCGGCAACACCATCCTTCGTCTTCGGGCACACTGAAACTCCGG
Internal bar code:TGAGTGGGTAGCCGGACTGGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:455
LEAP-Seq percent confirming:60.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTGACTGTCAACGTGCAC
Suggested primer 2:ATGGAGGGCATGCGTTTGTA