Insertion junction: CLIP2.068824_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.068824
Chromosome:chromosome 7
Location:4877405
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g346350 (1 of 2) PTHR10174//PTHR10174:SF113 - RETINALDEHYDE BINDING PROTEIN-RELATED // RETINALDEHYDE-BINDING PROTEIN 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACGAACACACACCGAACGCCGTACTCCAGTCCTGCGTGTTTCTTCCCTT
Internal bar code:GTAGTCGCTTTTTGCGGTGGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:88
LEAP-Seq percent confirming:71.4286
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CCCATGACGACCCATGTTGA
Suggested primer 2:ATCCCTTTCAAGCCTCCAGC