Insertion junction: CLIP2.068866_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.068866
Chromosome:chromosome 7
Location:3769839
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g338350 CPLD50 Conserved in the Plant Lineage and Diatoms; (1 of 1) PTHR10072//PTHR10072:SF43 - IRON-SULFUR CLUSTER ASSEMBLY PROTEIN // SUBFAMILY NOT NAMED 5'UTR
Cre07.g338400 (1 of 1) K14845 - RAT1-interacting protein (RAI1, DOM3Z) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCCTTTTCATATTTGCCGGTGCACTTGCAAGTAAGCCAGCACCACAGCA
Internal bar code:CGGCCCGGCGTGGCACCTCATT

Confirmation - LEAP-Seq

LEAP-Seq distance:2160
LEAP-Seq percent confirming:92.9825
LEAP-Seq n confirming:53
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:57

Suggested primers for confirmation by PCR

Suggested primer 1:CACCAGCTCTACAGGGTTGG
Suggested primer 2:TGCAAACCCCGTATGATGCT