Insertion junction: CLIP2.068910_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.068910
Chromosome:chromosome 9
Location:866714
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g403500 (1 of 1) PF12796//PF13637//PF13920 - Ankyrin repeats (3 copies) (Ank_2) // Ankyrin repeats (many copies) (Ank_4) // Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_3) 5'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATTCTTTATTTGGAGTTCTTTGCGCCGCGTCAAATGGGTCGGCAACTTT
Internal bar code:AAACGATGATCTGAGGCGCCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:3574
LEAP-Seq percent confirming:62.5
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCCACACACAAAGCTGTC
Suggested primer 2:GGGGGATAGTTGTAGTGCCG