Insertion junction: CLIP2.068943_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.068943
Chromosome:plastome
Location:165759
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802324 tic214,orf1995,ycf1,2717035,ChreCp059 Forms with TIC20, TIC56 and TIC100 the 1-MD complex mediating chlorolast protein import CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCCAGCTGAAGCCCGTAATAAATTTATCTCTACTAGTCCATTAGCATCG
Internal bar code:GGGAATTAGCCCTTTTTCGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:549
LEAP-Seq percent confirming:31.8182
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:30
LEAP-Seq n unique pos:44

Suggested primers for confirmation by PCR

Suggested primer 1:ACGGAAACCACGACGTAATGA
Suggested primer 2:GGTGTGCATGCTAGACGAGA