Insertion junction: CLIP2.068964_3

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.068964
Chromosome:plastome
Location:50637
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802285 psbA,ChreCp021,2716969 (1 of 2) K02703 - photosystem II P680 reaction center D1 protein (psbA); photosystem II protein D1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACTCCTAAGTTTACTTGCCCGAAGGGGAAGGACGTCCCCTTACGGGAAT
Internal bar code:TAGTGTCCTTAAGATTAAGCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:424
LEAP-Seq percent confirming:18.1818
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:GCGCTTGCACCTACTCTCTT
Suggested primer 2:ACGTCAGCACTCGTTCTGTT