Insertion junction: CLIP2.068978_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.068978
Chromosome:plastome
Location:77194
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802295 ChreCp030,psbN,2717031 photosystem II protein N; (1 of 1) K02715 - PsbN protein (psbN) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGTAAATCTGCTAGCGCAGGAAATAAATTTTATTCTATTTATATACTCC
Internal bar code:ACACATACAACTGCATGGAATG

Confirmation - LEAP-Seq

LEAP-Seq distance:794
LEAP-Seq percent confirming:86.6667
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:AAGTGACTTCGGTGCCTCTG
Suggested primer 2:AGGTTTACTTGCCCGACCAG