Insertion junction: CLIP2.069021_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.069021
Chromosome:chromosome 3
Location:8279915
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g199550 (1 of 1) IPR000504//IPR012677//IPR014720 - RNA recognition motif domain // Nucleotide-binding alpha-beta plait domain // Double-stranded RNA-binding domain 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCATGCTGCAGACAGACTTACTTCCAAGTCAGGAAAAAGACGCTTCGGAG
Internal bar code:GAGTTGTGGCGTGGCATGGGAC

Confirmation - LEAP-Seq

LEAP-Seq distance:6030
LEAP-Seq percent confirming:91.6667
LEAP-Seq n confirming:44
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:48

Suggested primers for confirmation by PCR

Suggested primer 1:TTCGGGCCTTTATGCACCAT
Suggested primer 2:TCAGGCAGCTGAAACTCCAG