Insertion junction: CLIP2.069216_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.069216
Chromosome:chromosome 12
Location:6090656
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g535019 (1 of 139) IPR029787 - Nucleotide cyclase 3'UTR
Cre12.g535050 (1 of 8) PF00211//PF01547 - Adenylate and Guanylate cyclase catalytic domain (Guanylate_cyc) // Bacterial extracellular solute-binding protein (SBP_bac_1) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACACATCGCAAGCATCATAAACAGTTGGCCACAAGACCTCGAGTAGGTCG
Internal bar code:TCGGGAAATAACGCTTCAATTG

Confirmation - LEAP-Seq

LEAP-Seq distance:4610
LEAP-Seq percent confirming:89.0511
LEAP-Seq n confirming:122
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:137

Suggested primers for confirmation by PCR

Suggested primer 1:GCACACCGGCAAGCTTTTAA
Suggested primer 2:GAGGAGTCCGTGCTGTTGAA