Insertion junction: CLIP2.069235_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.069235
Chromosome:plastome
Location:136707
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802320 chlN,2716986,ChreCp056 light-independent protochlorophyllide reductase subunit N; (1 of 1) K04038 - light-independent protochlorophyllide reductase subunit N (chlN) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGGCACATGCAAATCCATTAGAAGCTCGAGGTATTACAACAAAATGGTC
Internal bar code:GTACTGTAGGCTGTCTTCCTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:199
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:GAAGGGGAAGCGAAAGGACA
Suggested primer 2:CCCATTGTTGTAGCACGTGC