Insertion junction: CLIP2.069344_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.069344
Chromosome:chromosome 12
Location:2346153
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g508000 TIC40 (1 of 5) IPR006636 - Heat shock chaperonin-binding; Putative chloroplast enveloppe protein 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCCACAGGAATTCCCTGGCACTAATTTCTTCTCCCCTCTCTAGTTAGTT
Internal bar code:GATGGTCGATGAAGAACCAAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:889
LEAP-Seq percent confirming:26.6667
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:AGGCTCCTCCTTGTAGGGAG
Suggested primer 2:GATTCGTCCAGAGCACAGCT