Insertion junction: CLIP2.069381_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.069381
Chromosome:chromosome 9
Location:5213918
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g406950 (1 of 5) IPR000104//IPR016024 - Antifreeze protein, type I // Armadillo-type fold 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGCGGCGGTCGCGGTGCGCGGTGCGGCGACGGCCGCAGAGAAAGGGGT
Internal bar code:TTTTGGGGAACCGTTAGCTCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1594
LEAP-Seq percent confirming:92.5926
LEAP-Seq n confirming:50
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:54

Suggested primers for confirmation by PCR

Suggested primer 1:AACGGGCCAGGAGCAATAAA
Suggested primer 2:TAACACTCGCACACAGGGAC