Insertion junction: CLIP2.069391_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.069391
Chromosome:chromosome 14
Location:608295
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g611900 3'UTR
lncRNA_TCONS_00189627 3'UTR
lncRNA_TCONS_00191355 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGTCAGAGGCACTGACTCAGAGGGTCTGTCACGGACATACCGTGACCAA
Internal bar code:ACCGGGTCGACGTTATCAGTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1473
LEAP-Seq percent confirming:82.6087
LEAP-Seq n confirming:76
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:92

Suggested primers for confirmation by PCR

Suggested primer 1:ACGCCGACTCTTGTGTTGAT
Suggested primer 2:TGCTAGTTCTGTGCACCCTG