Insertion junction: CLIP2.069521_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.069521
Chromosome:plastome
Location:168279
Confidence (%):80
Locus systematic id Locus common name Defline Feature
CreCp.g802324 tic214,orf1995,ycf1,2717035,ChreCp059 Forms with TIC20, TIC56 and TIC100 the 1-MD complex mediating chlorolast protein import 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAGAGCTTGCACTCTCTAAAGAGAGATAAGAATAATCTGCAAATTAAA
Internal bar code:AAAGGATCATGACACACGGGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:163
LEAP-Seq percent confirming:37.5
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:GGTACCGCTACTAACTCGCC
Suggested primer 2:CTCGTTAGGGGAAGGGGAGA