Insertion junction: CLIP2.069553_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.069553
Chromosome:chromosome 4
Location:1615832
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g213000 MAE12 (1 of 5) PTHR11206:SF94 - DNA-DAMAGE-INDUCIBLE PROTEIN F; MATE efflux family protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCAGTGGTGGTGACGTTGGGCGTGGCAGCGGCGGCGGCATCTGCGGCGGC
Internal bar code:CCCAATGGTGTGTCAGTTAGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:2123
LEAP-Seq percent confirming:71.4286
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:CTTGTGTTGGGTTGTCAGCG
Suggested primer 2:TTTGTGCGCTGTAACACACG