Insertion junction: CLIP2.069595_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.069595
Chromosome:chromosome 3
Location:8923757
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g204689 PDE21 (1 of 17) 3.1.4.53 - 3',5'-cyclic-AMP phosphodiesterase / cAMP-specific phosphodiesterase; 3'%252C5'-cyclic-nucleotide phosphodiesterase 3'UTR
Cre03.g204801 (1 of 1) K10606 - E3 ubiquitin-protein ligase FANCL (FANCL, PHF9) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTACGCTCAGCCTTGACAACAAACCAGCTCACCATTCACATCAACCCAG
Internal bar code:GGTTCGTACGGGCGGTACCGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:3082
LEAP-Seq percent confirming:91.0448
LEAP-Seq n confirming:61
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:67

Suggested primers for confirmation by PCR

Suggested primer 1:TCTGCAGATTCCCAGGAGGA
Suggested primer 2:TGAAAGGGGCAGTCTTCGTC