Insertion junction: CLIP2.069626_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.069626
Chromosome:chromosome 2
Location:5308787
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g113050 (1 of 2) PTHR23344:SF28 - GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 3'UTR
Cre02.g113100 (1 of 1) PTHR14154:SF3 - MITOCHONDRIAL PYRUVATE CARRIER 1 outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCAGACGCACCAACGACACCCTTGATCCCGAAGTGTCATGTCGGCCAAT
Internal bar code:CTAGAACCTGATACGCTAAGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1008
LEAP-Seq percent confirming:73.913
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:TCCGTTGCGTCACCCAAATA
Suggested primer 2:GCTTGGAAGCGCGTCATAAG