Insertion junction: CLIP2.069668_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.069668
Chromosome:chromosome 14
Location:3481021
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g630550 DEG1B,DEG13,DEG12 Deg protease; (1 of 3) PTHR22939//PTHR22939:SF81 - SERINE PROTEASE FAMILY S1C HTRA-RELATED // PROTEASE DO-LIKE 1, CHLOROPLASTIC 3'UTR
Cre14.g801657 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGGGTCACGCAGCGTGCATTAGCGACAGATGACCGGTGTTCCATTACTT
Internal bar code:GTGCATAGGAGCCGAATAGTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2441
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:GTACACACACGCACACACAC
Suggested primer 2:ATTGCGAGTCTTGGACGTGT