Insertion junction: CLIP2.069670_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.069670
Chromosome:chromosome 17
Location:4782849
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g733208 (1 of 2) K13091 - RNA-binding protein 39 (RBM39, RNPC2) 3'UTR
Cre17.g733250 FKB16D,FKB16-4,FKB7 (1 of 1) PTHR10516:SF323 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-4, CHLOROPLASTIC; peptidyl-prolyl cis-trans isomerase, FKBP-type 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATGGCAAGGCACCAATGATGCAATCCTGCACGCCATTGTTGGCCGCGCA
Internal bar code:ATCCTCATTTAAGTCTATGCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1524
LEAP-Seq percent confirming:90.2439
LEAP-Seq n confirming:37
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:41

Suggested primers for confirmation by PCR

Suggested primer 1:CACACCTTGCTTTGCACCTC
Suggested primer 2:GTGCACAGTCCGCAAATTGT