Insertion junction: CLIP2.069670_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.069670
Chromosome:chromosome 17
Location:4782867
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g733208 (1 of 2) K13091 - RNA-binding protein 39 (RBM39, RNPC2) 3'UTR
Cre17.g733250 FKB16D,FKB16-4,FKB7 (1 of 1) PTHR10516:SF323 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-4, CHLOROPLASTIC; peptidyl-prolyl cis-trans isomerase, FKBP-type 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAGGCGGCACGTGTAACATATCTGTGAGCAAGCGTGTTCTGCGCGTCT
Internal bar code:ATCCTCATTTAAGTCTATGCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:3912
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:97
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:97

Suggested primers for confirmation by PCR

Suggested primer 1:GTGCACAGTCCGCAAATTGT
Suggested primer 2:CACACCTTGCTTTGCACCTC