Insertion junction: CLIP2.069671_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.069671
Chromosome:chromosome 4
Location:3330767
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g227251 (1 of 1) IPR006626//IPR008752//IPR011050//IPR029018 - Parallel beta-helix repeat // Peptidase M11, gametolysin // Pectin lyase fold/virulence factor // Chitobiase/beta-hexosaminidase domain 2-like 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTTCTCGTGCCCACACCAGCCGCCGGCGGGGCCTCACCCGCATCATACA
Internal bar code:GGAAGGCTAGGTAGTGTCATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:147
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:TGTCTTCACGCTCACACCTC
Suggested primer 2:TGCACAGCAACATGCCTTTC