Insertion junction: CLIP2.069700_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.069700
Chromosome:plastome
Location:8417
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802265 ChreCp003,2716966,chlB (1 of 1) K04039 - light-independent protochlorophyllide reductase subunit B (chlB); light-independent protochlorophyllide reductase subunit B CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATATTTACAGATGGTTTGGCTGTTTTAGTAATGTTTAAACAATTTTGTTT
Internal bar code:GATATTTAGAGATTACGGTTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:126
LEAP-Seq percent confirming:45.4545
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:TAGCCCGTCTAGCAAGTTGC
Suggested primer 2:GTGAAAACCAGGCTGCTTGG